PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000731.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 102aa    MW: 12221.3 Da    PI: 4.6684
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000731.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1523971593
                             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                             rl +p  f +  g  ++ +k++ l++++ + W+v++  +  +++ ++++GW++Fv++n +k gD +vFk++g   fe v
  Itr_sc000731.1_g00013.1 23 RLEFPMWFKAFVG--EALPKEIFLMNQRMNIWTVEI--TVIGDGLYFKNGWEKFVRENSIKNGDLMVFKYEGYGMFEIV 97
                             5555555543334..46899****************..999999**************************987777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-197100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5489102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1711100IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-611102IPR003340B3 DNA binding domain
CDDcd100173.07E-1221100No hitNo description
PfamPF023623.4E-132297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MLSLRNEIVK FYIPYRQETC SERLEFPMWF KAFVGEALPK EIFLMNQRMN IWTVEITVIG  60
DGLYFKNGWE KFVRENSIKN GDLMVFKYEG YGMFEIVVID DI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155923.13e-32PREDICTED: B3 domain-containing protein REM21-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-18B3 family protein