PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000740.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 517aa    MW: 56217 Da    PI: 7.634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000740.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16362409355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+h ++Er+RR+r+N++f +Lr+++P+       K++Ka+iLe A+ YI++L+
  Itr_sc000740.1_g00003.1 362 RTHVQAERQRRERLNQRFYTLRTMVPNV-----SKMDKASILEDAIAYINQLE 409
                              68*************************6.....5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-4764245IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.97E-18357414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-16358413No hitNo description
PROSITE profilePS5088818.108359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-14362409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17363414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-18365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MKDYKLPSAR KRGGAAATTN GYIMEAFLST APAFPAPPPT VINSDSRQPA AAVAVGEDGF  60
QENLQRRLQI LVDGAAEKWT YAIFWRSPAA GFEGQAGLAW GDGYYKGGVE KPTPRRSSSP  120
EMAAEQARRK RVLRELYALV ASPAETDAID EEITDPEWFF LISMNQSFQN DSNLPGHAFY  180
RSNRVWISGA GELDSSPFER AKQGKRLGIQ TMACIPSQNG VVELGSTDLI FQNDAHLMNQ  240
IGVLFNFEEN NDNNNNNPAM GLTSRSSCLS NPSSVMPSQE DSIPSVTSKR MAVEKEKTPA  300
KCPTPRRRNN GGDGVALALL ASGGVDSVPG GGGAVGGGGE RAKKRAKKAA ANGNGNGKEE  360
TRTHVQAERQ RRERLNQRFY TLRTMVPNVS KMDKASILED AIAYINQLES KLQKPPTSPH  420
HNIEDAAGDE EDADDQSADV DVKIIGEDAM IKIECNKKNH PAARLMAALK ELDLHIRHAN  480
VSVANKLMIQ QATVKMGSRH YTSDQLRSAL ESILAQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-50612476194Transcription factor MYC3
4rqw_B7e-50612476194Transcription factor MYC3
4rs9_A7e-50612476194Transcription factor MYC3
4yz6_A7e-50612476194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161852.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1R3I3Z11e-129A0A1R3I3Z1_COCAP; Uncharacterized protein
STRINGGorai.008G226300.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1974833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-57bHLH family protein