PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000746.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 203aa    MW: 22866.3 Da    PI: 4.3455
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000746.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-083262247
                             T-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                             + W+ Ia++++ gRt++++k++w++ 
  Itr_sc000746.1_g00009.1  3 E-WAQIAAKLP-GRTDNEIKNFWNSC 26
                             4.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001679.66E-6124No hitNo description
PROSITE profilePS5129416.382131IPR017930Myb domain
SuperFamilySSF466891.47E-7238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-12345IPR009057Homeodomain-like
PfamPF002494.6E-6326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGEWAQIAAK LPGRTDNEIK NFWNSCLKKK LIKRGIDPNT HKPIINTSSD APKSFAAEDH  60
NNINNSSSTI PKPTLPWPLN LSELEQPQAF DPLFLYDFQQ SLNNNNSEQY FHGGFSTLPS  120
LANFENMSMV NNGPITFPNW ETCDNNINTD SVSAHQFPFS AKIEDVEGCS DYDFSEYSLP  180
ALPQDLSGEN NLEFFMSCTK FNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185117.16e-80PREDICTED: transcription factor MYB86-like
TrEMBLA0A2G3C9S54e-24A0A2G3C9S5_CAPCH; Transcription factor MYB32
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-22myb domain protein 86