PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000748.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 237aa MW: 26368.2 Da PI: 5.7711

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000748.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	82	128	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +rE+ RR r+N++f+eL ++ + + +K++K++iL Av+ + +L Itr_sc000748.1_g00009.1 82 KAQREKMRRYRLNDRFQELSCVMDPG---KPPKMDKSAILSDAVRMVLQL 128 678**************7555555...9999***********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-8	81	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-12	82	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-6	83	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-12	83	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.39E-9	85	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAAPEEDGSN WLLLDLGFED IPLPGGKFAP LEPGYEWHSN AILAPAPPSI RQDESYVKFD 60 VSNGCSARKR MKSGACSGAD SKAQREKMRR YRLNDRFQEL SCVMDPGKPP KMDKSAILSD 120 AVRMVLQLRD EAQKLKESFE DLQEQVNELK AEKNELKDEK QKLKEEKDKL ELQLKALNSR 180 PGFLPHPPAT AVPFPAPHQL VGGKLVPFVG YPGIPMWQFA APAVIDTPED HSLPPVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169536.1	1e-164	PREDICTED: transcription factor bHLH115-like
Refseq	XP_019169538.1	1e-164	PREDICTED: transcription factor bHLH115-like
Refseq	XP_019169539.1	1e-164	PREDICTED: transcription factor bHLH115-like
Swissprot	Q9C682	5e-66	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A1S4C988	7e-99	A0A1S4C988_TOBAC; transcription factor ILR3-like
STRING	XP_009617474.1	1e-100	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA950	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	2e-51	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]