PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000754.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 253aa MW: 28381.3 Da PI: 8.1279

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000754.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.8e-20	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+e+Le+++ +++yp++ ++ +LA++lgLte+q++ WF+ rR k+k+ Itr_sc000754.1_g00011.1 14 KKRTIKTRAQVEALEKFYDEHKYPTELMKSQLAESLGLTEKQISGWFCHRRLKDKR 69 8*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-22	3	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-18	7	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.605	10	70	IPR001356	Homeobox domain
SMART	SM00389	2.1E-19	12	74	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-17	14	69	IPR001356	Homeobox domain
CDD	cd00086	2.84E-18	14	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNSGDENTHS DKNKKRTIKT RAQVEALEKF YDEHKYPTEL MKSQLAESLG LTEKQISGWF 60 CHRRLKDKRL FNGEVYLNGK QDRSSGVIQD RGSGLRQDSC GSTKQGDDRT SDPREVESRR 120 LTGVEFSTPD LTHEFGGHST RNYNCMDDTS LGSTSSLRNT YFPHNADSFD EGTSRYLTNS 180 CPTDLKTVKP RNGPSGYLKV KGHVENSAIT AVKRQLGRQY REDGPPLGVE FEPLPPGAFE 240 SPMQNNTNSK CSC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164009.1	1e-178	PREDICTED: uncharacterized protein LOC109160224
TrEMBL	A0A328D4V9	1e-146	A0A328D4V9_9ASTE; Uncharacterized protein
TrEMBL	A0A484MHL5	1e-146	A0A484MHL5_9ASTE; Uncharacterized protein
STRING	XP_009770801.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-72	HB-other family protein