PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000760.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 75aa MW: 8171.05 Da PI: 6.5017

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000760.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42.5	1.4e-13	50	74	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLHerFv+av+qLGG++ Itr_sc000760.1_g00004.1 50 KPRLRWTAELHERFVDAVTQLGGPD 74 79*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-12	47	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-8	50	75	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MYSAVPLRGL GLDAGDYNHH HHHHNHQGAL SLDGTNLPGD ACLVLTADPK PRLRWTAELH 60 ERFVDAVTQL GGPDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181015.1	4e-42	PREDICTED: protein PHR1-LIKE 2
Swissprot	Q94A57	3e-26	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0V0HHI6	4e-34	A0A0V0HHI6_SOLCH; Putative ovule protein
TrEMBL	A0A0V0I1F9	4e-32	A0A0V0I1F9_SOLCH; Putative ovule protein
STRING	PGSC0003DMT400080381	2e-32	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-27	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]