PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000761.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 176aa MW: 20401 Da PI: 8.5114

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000761.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.1	2.2e-14	92	141	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r+rr+++NRe+ArrsR RK+ ++eL v L +eN++L ++l++ ++ Itr_sc000761.1_g00009.1 92 RRQRRMISNRESARRSRMRKQRHLDELWSQVVRLRSENHSLLDKLNQASE 141 79*************************************99966666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-14	88	152	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	90	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.2E-12	90	142	No hit	No description
SuperFamily	SSF57959	1.21E-12	92	141	No hit	No description
Pfam	PF00170	9.7E-12	92	142	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.67E-19	93	143	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MIPSETMGIT YISPENSPPL PLPLPLPLPL DLTFMHNTFH FSRFLTNLPN YHSTPLQPIP 60 DLTQNNPSSC LGNNSTSDES YDKTQLRLMN ERRQRRMISN RESARRSRMR KQRHLDELWS 120 QVVRLRSENH SLLDKLNQAS EKHGEAVREN ARLKEEAADL RRLLAEAQLA GWSFDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	111	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164654.1	3e-87	PREDICTED: basic leucine zipper 8-like
Swissprot	Q9FMC2	8e-30	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1S4CIE3	1e-59	A0A1S4CIE3_TOBAC; basic leucine zipper 43-like
STRING	XP_009611005.1	2e-60	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	3e-32	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]