PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000767.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 385aa MW: 41619.4 Da PI: 8.4028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000767.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	322	367	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+L+ Itr_sc000767.1_g00001.1 322 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 367 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.212	316	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-15	319	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.92E-12	320	371	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-15	321	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	322	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDQTRCQQQQ MTSCLTRFRS APSSYFDTIL NAAAPTPPPA NTGGGGGYAR DDMLSGGGSG 60 PNIQQAFARL IATMGGARDA SSCSSGGASD AKPPLVPPPP KQEPRQEMKY SSESQGFCAG 120 DNSYGLMSPV NPGCFAPVKM NTGVSSSNLT RYNSSPAGFF DQFNIKNGSN ANAAEASFAS 180 PNAFKNRRVG VDLSPRHPPS SSSRQMASIS ETAVKEEACS GDAIGFNEDE TMDESYLSSF 240 PIPSWDDSDL LSDDFLKVTD EKPSLNAKAP DFKNTEGRTR PPARLSHHLS LPKSSAELSS 300 ILQDSVPCRV RAKRGCATHP RSIAERVRRT RISDRMRKLQ ELVPNMDKQT NTADMLDLAV 360 DYIKDLEQKV KRLADNRAKC RCSNK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDQTRCQQQQ MTSCLTRFRS APSSYFDTIL NAAAPTPPPA NTGGGGGYAR DDMLSGGGSG  60
PNIQQAFARL IATMGGARDA SSCSSGGASD AKPPLVPPPP KQEPRQEMKY SSESQGFCAG  120
DNSYGLMSPV NPGCFAPVKM NTGVSSSNLT RYNSSPAGFF DQFNIKNGSN ANAAEASFAS  180
PNAFKNRRVG VDLSPRHPPS SSSRQMASIS ETAVKEEACS GDAIGFNEDE TMDESYLSSF  240
PIPSWDDSDL LSDDFLKVTD EKPSLNAKAP DFKNTEGRTR PPARLSHHLS LPKSSAELSS  300
ILQDSVPCRV RAKRGCATHP RSIAERVRRT RISDRMRKLQ ELVPNMDKQT NTADMLDLAV  360
DYIKDLEQKV KRLADNRAKC RCSNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163320.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A328DK85	1e-107	A0A328DK85_9ASTE; Uncharacterized protein
TrEMBL	A0A484N4H7	1e-107	A0A484N4H7_9ASTE; Uncharacterized protein
STRING	Solyc12g100140.1.1	3e-99	(Solanum lycopersicum)
STRING	PGSC0003DMT400056716	3e-99	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-51	bHLH family protein