PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000769.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 163aa MW: 18125.3 Da PI: 8.3849

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000769.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.7	5e-27	5	54	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + YkeCl+NhAaslG++a+DGCgEf+p+ aal+CaACgCHRnFHR+ v+ Itr_sc000769.1_g00011.1 5 NELYKECLRNHAASLGSYATDGCGEFTPD------GAALHCAACGCHRNFHRKVVA 54 568***********************8......589*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.2E-23	7	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.3E-23	8	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.039	8	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-9	8	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.8E-29	79	147	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.31E-17	81	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.5E-29	87	145	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDNTNELYKE CLRNHAASLG SYATDGCGEF TPDGAALHCA ACGCHRNFHR KVVAYGRGAA 60 AVEDHDMMGT PTPPAPEMTE SPERSGKKRF RTKFTAEQKE KMLAFAEKLG WKLQRKDEED 120 EIERFCRGVG VSRKVFKVWM HNHKNNNSST PSASTGNVSS LTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-22	88	150	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167498.1	3e-94	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	4e-42	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2G9FYN7	4e-75	A0A2G9FYN7_9LAMI; Uncharacterized protein
STRING	POPTR_0012s03770.1	3e-74	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11865	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-34	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]