PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000771.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 347aa MW: 38779.7 Da PI: 7.8761

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000771.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.7e-32	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+a++qLGG++kAtPk+++++m+++gLtl+h+kSHLQk+Rl Itr_sc000771.1_g00003.1 20 KPRLKWTPELHQRFVDAIAQLGGADKATPKSLMRAMNIHGLTLYHLKSHLQKFRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.376	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-30	17	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.4E-15	19	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-22	20	75	IPR006447	Myb domain, plants
Pfam	PF00249	5.3E-7	22	72	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-23	115	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MALQKSNNKD PRLVLSRDAK PRLKWTPELH QRFVDAIAQL GGADKATPKS LMRAMNIHGL 60 TLYHLKSHLQ KFRLGKSQQL QPYQDNEQGD HRECLSHLPA ADRCDEAERQ MNENMQIARA 120 LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVMKKAQ ETLAGYGSCT GVELAAKTEL 180 SKLVSMVEMG VCLQSSSMSV LTEKEGSVTK ETENKHLRTA TGCSLESSSS PSSSESSGRM 240 EHSRAKQRAE DDSHTIELSL MEMHSTHHNA SNDEARSGRK RSQSSTSMSD NTACVEKPSD 300 KIFKASSTYD EKKYGFLENL DLNAKCLSDF DTGPKVIDLN SNGVGTI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MALQKSNNKD PRLVLSRDAK PRLKWTPELH QRFVDAIAQL GGADKATPKS LMRAMNIHGL  60
TLYHLKSHLQ KFRLGKSQQL QPYQDNEQGD HRECLSHLPA ADRCDEAERQ MNENMQIARA  120
LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVMKKAQ ETLAGYGSCT GVELAAKTEL  180
SKLVSMVEMG VCLQSSSMSV LTEKEGSVTK ETENKHLRTA TGCSLESSSS PSSSESSGRM  240
EHSRAKQRAE DDSHTIELSL MEMHSTHHNA SNDEARSGRK RSQSSTSMSD NTACVEKPSD  300
KIFKASSTYD EKKYGFLENL DLNAKCLSDF DTGPKVIDLN SNGVGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164978.1	0.0	PREDICTED: myb family transcription factor PHL8-like isoform X1
TrEMBL	A0A1S3XQY0	1e-106	A0A1S3XQY0_TOBAC; uncharacterized protein LOC107767787 isoform X2
STRING	XP_009777109.1	1e-107	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-65	G2-like family protein