PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000771.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 452aa MW: 48757.1 Da PI: 7.0093

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000771.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	116	175	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+s Itr_sc000771.1_g00004.1 116 PDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGSGRRKNKSS 175 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	113	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSEVKDPAIK LFGMTISLPP APAPPQDDGD VSNSVTTPSH DNKDTSGEEL TGDKQEVESP 60 APIAEESVEA VTSSVISEDP PRTQSPDKGT GSSKDIKKDD PSESSDSQEK TLLKKPDKIL 120 PCPRCNSLDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGIM RNVPVGSGRR KNKSSATNYH 180 HIMVSENANG AVLAFGSDTP LCKNITTSVL DLVEKPQNCA PNGRYRGSEQ VPACYGGRDT 240 GNEHSNGPSS MSIERGGNGA GVTESMWKNF HGFPPQVPCF PGPPPWPCSW NPALNPSSFP 300 VSFYPAPAAP YWSCSPWNVA WISPSSSSDL SAQCSSPMSQ TLGKRSREGH ILKSSNSSTG 360 EEPLGKTREN RGTTTVLIPK ALRIDDSNEA AKSSIWSTLG IKNEKTDSPG ASLLKAFSSK 420 ADEKNPHVAD HSWLMKANPA ALSRSLNFHE ST

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSEVKDPAIK LFGMTISLPP APAPPQDDGD VSNSVTTPSH DNKDTSGEEL TGDKQEVESP  60
APIAEESVEA VTSSVISEDP PRTQSPDKGT GSSKDIKKDD PSESSDSQEK TLLKKPDKIL  120
PCPRCNSLDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGIM RNVPVGSGRR KNKSSATNYH  180
HIMVSENANG AVLAFGSDTP LCKNITTSVL DLVEKPQNCA PNGRYRGSEQ VPACYGGRDT  240
GNEHSNGPSS MSIERGGNGA GVTESMWKNF HGFPPQVPCF PGPPPWPCSW NPALNPSSFP  300
VSFYPAPAAP YWSCSPWNVA WISPSSSSDL SAQCSSPMSQ TLGKRSREGH ILKSSNSSTG  360
EEPLGKTREN RGTTTVLIPK ALRIDDSNEA AKSSIWSTLG IKNEKTDSPG ASLLKAFSSK  420
ADEKNPHVAD HSWLMKANPA ALSRSLNFHE ST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165096.1	0.0	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019165097.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1S4AY86	1e-145	A0A1S4AY86_TOBAC; cyclic dof factor 1-like
STRING	XP_009628724.1	1e-145	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-48	cycling DOF factor 3