PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000772.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 185aa    MW: 20484.9 Da    PI: 5.3711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000772.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-181767155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+y+GVr +k +g+Wv+eIr+    gk++r++lg+f tae+Aa a++ a+ +l+g
  Itr_sc000772.1_g00011.1 17 SHYRGVRKRK-WGKWVSEIRET---GKKTRIWLGSFETAEMAAVAYDTAAFYLRG 67
                             79*****999.**********3...457*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-121767IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221776IPR016177DNA-binding domain
CDDcd000185.13E-321775No hitNo description
SMARTSM003806.1E-371881IPR001471AP2/ERF domain
PROSITE profilePS5103222.3521875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-311876IPR001471AP2/ERF domain
PRINTSPR003671.6E-101930IPR001471AP2/ERF domain
PRINTSPR003671.6E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEPNTYNVTN VVGGVPSHYR GVRKRKWGKW VSEIRETGKK TRIWLGSFET AEMAAVAYDT  60
AAFYLRGTSA RLNFPQGRWR RTRRRDIRAA AREAAMLLKG AMAEDAPPPP RAGSSSSASN  120
VAAAAAPVNV GLSEREIQAI NDSPLDSSEI WSEMEAGFHV MGDDQSMVFP SSEYEDEIDD  180
SLWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-191775160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-191775463ATERF1
3gcc_A3e-191775463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163678.14e-82PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I23e-38ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2P5SR216e-46A0A2P5SR21_GOSBA; Uncharacterized protein
STRINGGorai.005G116500.13e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-31ERF family protein