PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000772.1_g00020.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 447aa MW: 50665.5 Da PI: 8.7514

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000772.1_g00020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.8	4.1e-09	345	386	1	43
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 kfY++Y + vGF+vr s+ kks r++ei + +vCs+eg+++ Itr_sc000772.1_g00020.1 345 KFYRQYTRVVGFDVRHSTVKKS-RDDEIALKYMVCSREGFKNA 386 6****************999.6666999********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01627	2.8E-88	55	267	IPR006514	IRX15/IRX15L/IGXM
Pfam	PF04669	8.4E-69	78	261	IPR021148	Polysaccharide biosynthesis domain
Pfam	PF03101	3.5E-6	345	386	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045492	Biological Process	xylan biosynthetic process

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSRPKTQNAI TNLKLMIIVC SFLFMAVMVL IRSNVTISSS PNPICPTPTE ECNKISPSLA 60 NALVHYATSN ITPQQTLKEI SVSLRILDKK SPCNFLVFGL GHDSLMWSAL NHGGRTVFLE 120 EDKSWIDQIR RRVPSLESYH VRYDSKVSRA KELMGIGMGI ECREVVDPRA SKCGLAIKNL 180 PDEVYEVDWD VIMVDAPTGY HDEAPGRMNA IYTAGLMARN RENGETDVLV HDVDRVVENK 240 FSKAFLCEGY FVEEEGRIRH FTVPSHRVRL GRPFSFVGVR WFMRARLIRK GYCALVRVKW 300 CIISGVGGMQ MEISSGSTKY WCPEHDDAIK SQVRQCYNTL EDKVKFYRQY TRVVGFDVRH 360 STVKKSRDDE IALKYMVCSR EGFKNAAMVM PNIGDGDVVG SIMQKRCMIS NRVGDKPKKG 420 ATNVDLWNFK CDLQEYIING DAHSCSK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSRPKTQNAI TNLKLMIIVC SFLFMAVMVL IRSNVTISSS PNPICPTPTE ECNKISPSLA  60
NALVHYATSN ITPQQTLKEI SVSLRILDKK SPCNFLVFGL GHDSLMWSAL NHGGRTVFLE  120
EDKSWIDQIR RRVPSLESYH VRYDSKVSRA KELMGIGMGI ECREVVDPRA SKCGLAIKNL  180
PDEVYEVDWD VIMVDAPTGY HDEAPGRMNA IYTAGLMARN RENGETDVLV HDVDRVVENK  240
FSKAFLCEGY FVEEEGRIRH FTVPSHRVRL GRPFSFVGVR WFMRARLIRK GYCALVRVKW  300
CIISGVGGMQ MEISSGSTKY WCPEHDDAIK SQVRQCYNTL EDKVKFYRQY TRVVGFDVRH  360
STVKKSRDDE IALKYMVCSR EGFKNAAMVM PNIGDGDVVG SIMQKRCMIS NRVGDKPKKG  420
ATNVDLWNFK CDLQEYIING DAHSCSK

Functional Description ? help Back to Top
Source	Description
UniProt	Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan. {ECO:0000269\|PubMed:23045523}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163675.1	1e-170	PREDICTED: glucuronoxylan 4-O-methyltransferase 3-like
Swissprot	Q9T0F7	1e-118	GXM2_ARATH; Glucuronoxylan 4-O-methyltransferase 2
TrEMBL	B9SK84	1e-138	B9SK84_RICCO; Uncharacterized protein
STRING	XP_002526403.1	1e-138	(Ricinus communis)

Publications ? help Back to Top
Brown D, et al. Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall. Plant J., 2011. 66(3): p. 401-13 [PMID:21251108] Jensen JK, et al. The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Plant J., 2011. 66(3): p. 387-400 [PMID:21288268] Yuan Y,Teng Q,Lee C,Zhong R,Ye ZH Modification of the degree of 4-O-methylation of secondary wall glucuronoxylan. Plant Sci., 2014. 219-220: p. 42-50 [PMID:24576763]