PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000774.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 356aa    MW: 38958.6 Da    PI: 5.8173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000774.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.7e-29128189159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp++++itY+g+H+++
  Itr_sc000774.1_g00002.1 128 LDDGYSWRKYGQKDILGARYPRGYYRCTHRhaqGCLATKQVQRSDEDPTIFDITYRGRHTCN 189
                              59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388123191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-28125190IPR003657WRKY domain
SuperFamilySSF1182901.27E-25127190IPR003657WRKY domain
SMARTSM007746.4E-42128190IPR003657WRKY domain
PfamPF031061.0E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDNIGGDREF LQSLISELAN GRDAATHLQM ILNAPSSFSP ETRELLVHNV LASYDRALGM  60
LNYSPESAAV QPPAAAGPAL GIESPSSFTG SPHSEDSDRE YDGSRKRNAP RWTQKVQVCP  120
GSGLEGHLDD GYSWRKYGQK DILGARYPRG YYRCTHRHAQ GCLATKQVQR SDEDPTIFDI  180
TYRGRHTCNQ AGGNPNPPQN QEPNMTESQR SIIPFTQQQG HPSETLLSFR RQLRVETSDL  240
DNTPQENQQF TYLYTFPSSS DQSYTFRPPS VPDAGNFSWS ISPSFGSPGS TTASSDFGRR  300
PRQTTEAPPT STTNAGGMIP AVSAGNSPAV DPGFAFGTMG FDSNFTFDSH GFFPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21127188768OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195131.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A068U9W83e-95A0A068U9W8_COFCA; Uncharacterized protein
TrEMBLA0A484L9F81e-95A0A484L9F8_9ASTE; Uncharacterized protein
STRINGevm.model.supercontig_3.532e-92(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-50WRKY DNA-binding protein 30