PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000787.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 215aa MW: 23310.3 Da PI: 7.4133

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000787.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.9	1.9e-20	112	146	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Itr_sc000787.1_g00009.1 112 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 146 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.9E-19	106	158	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.7E-14	108	147	No hit	No description
PROSITE profile	PS50114	13.784	110	142	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.0E-17	110	146	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.17E-13	111	143	No hit	No description
PROSITE pattern	PS00344	0	112	137	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.5E-18	112	146	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MMHRCSSSCS CGMYNQSSND YSAGFSMFFS SPPANQNHQY YYEEAPDYDQ NIYSSSSSSS 60 VDCTLSLGTP STRLTSANER PPSESRRSLS SSSHKSGRGG AAASDPLVTR RCANCDTTST 120 PLWRNGPRGP KSLCNACGIR FKKEERRASA AAAAAAAANG GGAGGMDMMH NSWAHHTQMP 180 YNNYSSSAYG NEYGYMEDDD RDSAFLSWRL NVHCS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154709.1	1e-102	PREDICTED: GATA transcription factor 19-like
Swissprot	Q9ZPX0	6e-37	GAT20_ARATH; GATA transcription factor 20
TrEMBL	A0A1S4CIH2	9e-66	A0A1S4CIH2_TOBAC; GATA transcription factor 19-like
STRING	XP_009603282.1	1e-65	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3818	23	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	2e-30	GATA transcription factor 19

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]