PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000790.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 360aa    MW: 41340.9 Da    PI: 7.1223
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000790.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35641562103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Flkk+y++++d++++ +isw+ +  sfvv+d+++++++vLpkyFkh+nf+SF+RQLn+Y F+k+++++         weF+++ F+
  Itr_sc000790.1_g00009.1  64 FLKKTYDMVDDPNTDPVISWTPTRASFVVWDPHRLSTDVLPKYFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQ 140
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              kgk++ll++ikr+k++
  Itr_sc000790.1_g00009.1 141 KGKRHLLKSIKRRKHQ 156
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3860153IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-3360153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5760153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186487IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3264153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEVQVQHMMS DEGIAVKEEP MVFLVEDDGF GIPGVIGGGG DGEMMMGSVP RPLEGLREIG  60
PPPFLKKTYD MVDDPNTDPV ISWTPTRASF VVWDPHRLST DVLPKYFKHN NFSSFIRQLN  120
TYRFRKIDSD RWEFANEGFQ KGKRHLLKSI KRRKHQHHHH HPQAMQQAGM GHKWVDSCSE  180
TQAELCKLRN DQNLLKMEIM RLKQQQETTD NHLAMVRERL ESTENRHKYI VFFVVKAFRN  240
PFFIQHLTEK MRQRTAINGG GGRVAKKRRL VAPESSTNAA AAAADGKNLR GQEELDQKVK  300
TPAAAANSPE MNSENFILWE KLVEDDMIYE NETEAETAKH QSAIVHELED LIARPPEWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23341531129Heat shock factor protein 1
5d5v_B3e-23341531129Heat shock factor protein 1
5d5v_D3e-23341531129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152LKSIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151313.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A328E1361e-151A0A328E136_9ASTE; Uncharacterized protein
STRINGXP_009606363.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-73heat shock transcription factor A2