PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000799.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 594aa    MW: 61362.3 Da    PI: 6.5804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000799.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.83.1e-15290344357
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                              + kr rr+ +NRe+ArrsR+RK+a + eL + v +L+ eN++L k+l  ++++  
  Itr_sc000799.1_g00012.1 290 DAKRVRRMLSNRESARRSRRRKQAHLTELDTQVSQLKIENSSLLKRLTDISQKFN 344
                              689*****************************************99988877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-12284344No hitNo description
SMARTSM003382.2E-17288352IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.381290345IPR004827Basic-leucine zipper domain
PfamPF001706.3E-13291341IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-11292341No hitNo description
CDDcd147026.91E-6293344No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
PfamPF124981.4E-25359468IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MERVFSVDEI ADQFWSQPPI LLSQAADLDL GSSSATMMNR SSSEWAFQRF LQEASVVDHS  60
SSPLPPVSSS AAAAVAASST SISQSEQVPP EEFLEIKQQN LAPNRNSSFR LHNSGTATAA  120
ATNSKSTSTN VTSFGSTHAS DIPDNSEKYQ AFLKSRLDLA CAAVASRAKY LRPQDSTTMT  180
PGMGSSVSNT VQPESQPLFI NCLGGAIHTF SLGTSLLLAG EDLGTCGSEH DSLKGQEEGG  240
APTGIPSLPA VQKKSSGQVR STSSGSEQSD DDEAEGEGEA ETNQKMDPAD AKRVRRMLSN  300
RESARRSRRR KQAHLTELDT QVSQLKIENS SLLKRLTDIS QKFNEAAVDN RVLKADVETL  360
RAKVKMAEET VKSVTGLSPL FQAMADISTM GMQSFAGNPT DRSIGAALPV QNDPNHHSYY  420
QSPSGVHFQP HDPIIQNGLV DIPPMDNVLQ VPATATVGAN GIGRATAVPP ATVGASGLGR  480
ATAVPPATVM ASGLGRATAV PPATVMASGI GRATAVPQAT VMASGIGRAT AVPPATAGAS  540
GIGRATAVSP ATVGGSGIGR ATAGSPATGG ASGIGGATAG STHPVVSMEH FQKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304311RRSRRRKQ
2306311SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161600.10.0PREDICTED: light-inducible protein CPRF2-like isoform X1
SwissprotQ990901e-85CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S3YD351e-139A0A1S3YD35_TOBAC; light-inducible protein CPRF2-like
TrEMBLA0A1U7XCW91e-139A0A1U7XCW9_NICSY; light-inducible protein CPRF2-like
STRINGXP_009787496.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.16e-36bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]