PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000802.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 140aa    MW: 15878.2 Da    PI: 11.2447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000802.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-143883354
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                              kG+r +k +g+WvAeIrd      ++r +lg++ t+  Aa+a++    +l 
  Itr_sc000802.1_g00002.1 38 NKGIRMRK-WGKWVAEIRDT-----NTRLWLGSYYTPVAAARAYDVVLFYLC 83
                             59***999.**********5.....5*******************9887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-253698IPR001471AP2/ERF domain
PROSITE profilePS5103218.7553792IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-173893IPR016177DNA-binding domain
PRINTSPR003672.7E-63849IPR001471AP2/ERF domain
CDDcd000182.12E-203993No hitNo description
PfamPF008472.2E-83984IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-243993IPR001471AP2/ERF domain
PRINTSPR003672.7E-65874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNNKKLARTA GGGDGVGASR GGGAEKKKRR PKQKNLYNKG IRMRKWGKWV AEIRDTNTRL  60
WLGSYYTPVA AARAYDVVLF YLCGPRAKLN FPDCVVGDGH HRQLTPKEIQ NRATRVGYWV  120
DAIRRGLQGH RQLTQKEIQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12529KKKRR
22530KKKRRP
32532KKKRRPKQ
42631KKRRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339868.11e-35PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9FH944e-29ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0V0INJ82e-34A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like
TrEMBLM0ZXP82e-34M0ZXP8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102284e-35(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-31DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]