PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000821.1_g00025.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 111aa MW: 12402.2 Da PI: 5.8892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000821.1_g00025.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.6	4.2e-13	53	77	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tG+C yG+rC+F+H++ Itr_sc000821.1_g00025.1 53 EADCMYYLKTGFCGYGARCRFNHPR 77 689********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.361	50	78	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	50	77	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-7	53	78	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-10	53	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-6	56	77	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MERYSGTQVM EGGAPVDPVA EWTTPVGETG LEEPMWRLSL AGGTESYPER PNEADCMYYL 60 KTGFCGYGAR CRFNHPRDRN LAVRAMRPTG GEYPERVGQP VCQVKLLKCL L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181124.1	3e-65	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q9SQU4	8e-32	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	A0A1S3X4X9	1e-53	A0A1S3X4X9_TOBAC; zinc finger CCCH domain-containing protein 58-like
STRING	XP_009588295.1	2e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16834	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	3e-34	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]