PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000826.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 348aa MW: 37707.4 Da PI: 7.9816

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000826.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	49	110	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Itr_sc000826.1_g00007.1 49 KEQAVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 110 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	46	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDTAQWPQEI VVKPMEEIVG TSSGSNNNSS SSSKPSSSSC GERKIRPQKE QAVNCPRCNS 60 TNTKFCYYNN YSLSQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRSSS VSSVSVSVSS 120 ANNNGGLAVK KLPDLVPPVP SILHHHHHLH QQQQQNPSKI HENHHHHHQD LNLGFSQHQD 180 FKTISELIQV PNYESKDGGN DPHRPSSSSS PPPSHHHLSA LELLTGMTTA ATSSRGLMSS 240 FIPMPPIPDP NNYSSFPLPE FKPSLNFSLD GIGNNNGAYG NHHHLQGMQE TATASGGAGR 300 LFFPFEDLKS TAAPDGGEQE RDNNNPAGES TGGHGFWNGV LGAGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDTAQWPQEI VVKPMEEIVG TSSGSNNNSS SSSKPSSSSC GERKIRPQKE QAVNCPRCNS  60
TNTKFCYYNN YSLSQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRSSS VSSVSVSVSS  120
ANNNGGLAVK KLPDLVPPVP SILHHHHHLH QQQQQNPSKI HENHHHHHQD LNLGFSQHQD  180
FKTISELIQV PNYESKDGGN DPHRPSSSSS PPPSHHHLSA LELLTGMTTA ATSSRGLMSS  240
FIPMPPIPDP NNYSSFPLPE FKPSLNFSLD GIGNNNGAYG NHHHLQGMQE TATASGGAGR  300
LFFPFEDLKS TAAPDGGEQE RDNNNPAGES TGGHGFWNGV LGAGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019149662.1	1e-136	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A068UV02	1e-103	A0A068UV02_COFCA; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	4e-95	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-45	Dof family protein