PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000828.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 251aa    MW: 27905.1 Da    PI: 6.3724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000828.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13143244199
                              EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+kvl+  d  lk++rl +pk++ae++  ++  + ++ +++ d++g++We+ ++   + +s++yvl+ G +++  a++ ++gD+v+
  Itr_sc000828.1_g00008.1 143 FEKVLSATDtDLKLSRLFIPKTHAETFfpDLCGRHGMPISILDTEGKQWEFFIRCwpNPSSKTYVLE-GLRDYIIAKKWQAGDIVT 227
                              67777655515677**********999**444456788***************87355556669999.****************** PP

                              EEE-SS.SEE..EEEEE-S CS
                       B3  82 Fkldgr.sefelvvkvfrk 99 
                              F   ++  +++l+++++++
  Itr_sc000828.1_g00008.1 228 FC--QTkPGGKLMMGLRKT 244
                              **..454999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-21138245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-17140244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-18141243No hitNo description
SMARTSM010192.1E-9143245IPR003340B3 DNA binding domain
PfamPF023629.9E-10143243IPR003340B3 DNA binding domain
PROSITE profilePS508639.305144245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIQIEAVLMT TGHSCSLDCC AGVSSAYDEG KFCETFHSND DGWRDCEGCG KLVHCGCIVS  60
FNTYLLLDFG GIMCMECSKI SFILEHFLFL QAYPPNSARN CCMYPASPLP FDDPQQDPSR  120
KNQKESQYCP HAIGPGSIVT PLFEKVLSAT DTDLKLSRLF IPKTHAETFF PDLCGRHGMP  180
ISILDTEGKQ WEFFIRCWPN PSSKTYVLEG LRDYIIAKKW QAGDIVTFCQ TKPGGKLMMG  240
LRKTSTGSAS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A9e-301392475112B3 domain-containing transcription repressor VAL1
6fas_B9e-301392475112B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183276.11e-162PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X1
SwissprotQ6Z3U32e-27Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G9HK542e-87A0A2G9HK54_9LAMI; Uncharacterized protein
STRINGMigut.H01903.1.p1e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-29HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]