PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000829.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 346aa    MW: 37763.5 Da    PI: 7.3744
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000829.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19239272134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Itr_sc000829.1_g00016.1 239 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 272
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-17233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53233269IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15238296No hitNo description
CDDcd002021.92E-15238285No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14238270IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-17239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSVVEPGYLD GIANGVVNGC DFFPDLLNIL DFPEESLEGD DSVGDWDASM LQCLGPVPSX  60
LEGDDSVGDW DASMLQCLGP VPSDALMGLS PVHQANVDDG SLRTALKSKA FVDISPLQKD  120
KLNYVQEITG AALLYPSKYF DAQQPGVFQT QSPVSVLESS ISCSGGKTVP IKSGITIPVR  180
TRSKRARSAV NPWILIPPLS KKTWSGKKRR ERNSEVCNNN GGATSDHHPC SSSSLVKKCT  240
HCEVTKTPQW REGPMGPKTL CNACGVRYRS GRLFPEYRPA ASPTFVPTLH SNSHRKVVEM  300
RRKAIQEEAP IVEDSLKKGA ETRCSDLQDL DSISHRWFAR SNTLRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166505.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A484NT811e-101A0A484NT81_9ASTE; Uncharacterized protein
STRINGXP_009795845.18e-88(Nicotiana sylvestris)
STRINGXP_009621793.18e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-48GATA transcription factor 11