PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000844.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 231aa    MW: 25398.3 Da    PI: 9.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000844.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08125165954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Itr_sc000844.1_g00018.1 125 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 165
                              699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-13117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-11118170No hitNo description
SuperFamilySSF474593.14E-14120178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-12122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDVNLMKSSS ENEMEIMTLL TMRPNNPHHH QPLENLGFSI HNPYDAGAGA ATLSFSGVHQ  60
HHPVAGAGAD PPRHKISSNG GSMEAMREMI FRIAMMQPIH IDPESVKPPR RKNVKISKDP  120
QSVAARHRRE RISEKIRILQ RLVPGGTKMD TASMLDEAVH YVKFLKKQLE YLEAAASGPT  180
PMIPGFPTTM SPPTLLDMNM NIMNYSSSST SGSMKACQAA IPSMGSNLQM L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182611.11e-123PREDICTED: transcription factor HEC2-like
TrEMBLA0A484L2121e-64A0A484L212_9ASTE; Uncharacterized protein
STRINGXP_009610959.15e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-47bHLH family protein