PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000847.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 281aa    MW: 30830.2 Da    PI: 7.2589
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000847.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.5e-392888363
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                             e+a+kcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss
  Itr_sc000847.1_g00026.1 28 EHAQKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 88
                             6789*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-252180IPR003851Zinc finger, Dof-type
PfamPF027013.7E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1523185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSQTLESMM VASAKAQQQE KKPRPADEHA QKCPRCESTN TKFCYYNNYS LSQPRYFCKS  60
CRRYWTKGGT LRNVPVGGGC RKNRRSSSSK ARISTAQQDP HTSSPVLTNF PYESPHDLGL  120
TFASLQKQAD GNLGLEDHEM AAPMMCNPNN TLSDVLGNYG ASSHGFLDSL RGTGFLEPPT  180
NGLYHNHSLQ YYGAVGEMGM PYDVHMGGGV STSAAVKQEM YSNGRDEGDD DNRVLWGFPW  240
QHGGGEGNMN MVVNDVDSSR QSSCNIGFGS SWHGLVNSPL M
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763886e-41AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843606e-41AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199302.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A1S4BLF56e-90A0A1S4BLF5_TOBAC; dof zinc finger protein DOF2.1-like
STRINGXP_009598584.19e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-37Dof family protein