PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000848.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 314aa    MW: 34022.7 Da    PI: 10.3456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000848.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.7e-31243300359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Itr_sc000848.1_g00020.1 243 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPAMLIVTYEGEHNHS 300
                              99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-16192239IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33229300IPR003657WRKY domain
PROSITE profilePS5081130.722236302IPR003657WRKY domain
SuperFamilySSF1182907.72E-27238300IPR003657WRKY domain
SMARTSM007743.4E-38241301IPR003657WRKY domain
PfamPF031066.3E-27243299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVDLMMDYR HGGNGRSVDL TFAKKLEESA VVQEAASGLE SVHTFIRLLS QQKHKAAESR  60
EKSTVEIEMV ADVAVNKFQK VINLLGRTRT GHARFRRAPV VSSLPVQAKV DTKVYNPTPI  120
QQVPPPVSAA AAGKTISFSY SPEVSRANSF NISSLTGETE SKQASSSSAF QITNLSLASS  180
GGKPPLSSSS LKRKCSSSEN NLSGKCSGGS SGRCHCSKRK KLRQKTVTRV PAISMKMADI  240
PPDDFSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RAVDDPAMLI VTYEGEHNHS  300
LSVAETNSLI LESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21228301173WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195463.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX02e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLM1CC131e-160M1CC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000642561e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-66WRKY DNA-binding protein 15