PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000850.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 242aa MW: 26041.1 Da PI: 9.0771

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000850.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.3	1.1e-10	45	110	1	47
TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ +Wk+I + +g +t q++s+ qky Itr_sc000850.1_g00014.1 45 RESWTEPEHDKFLEALQLFNCClhandtllpqacdgegrfdrDWKKIEAFIG-SKTVIQIRSHAQKY 110 789**************999**************************.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.8E-12	39	116	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-6	43	116	IPR009057	Homeodomain-like
SMART	SM00717	8.9E-4	44	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-7	45	110	IPR001005	SANT/Myb domain
CDD	cd00167	5.36E-5	47	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGMALANPDS ISSPTAVNSN APPPSSYSDD PTKKVRKPYT ITKSRESWTE PEHDKFLEAL 60 QLFNCCLHAN DTLLPQACDG EGRFDRDWKK IEAFIGSKTV IQIRSHAQKY FLKVQKSGTN 120 EHLPPPRPKR KAAHPYPQKA PKSAPTVSSL SNSFQTPLAF PDAGLTPKPD SSLIPIVPVT 180 SAALPSWKDY SAQAGSSSVK KDNMSSVGQA HVNTYSSSGN EGAPSELTDQ GANGSSMKGE 240 SN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF025314	2e-46	EF025314.1 Catharanthus roseus clone 4C80 MYB transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178038.1	1e-137	PREDICTED: protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-54	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A1J6K0C6	1e-80	A0A1J6K0C6_NICAT; Protein reveille 6
STRING	XP_009802901.1	9e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	3e-42	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]