PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000868.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 218aa MW: 25075 Da PI: 9.3538

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000868.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.7	1.3e-28	6	83	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s++ge+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Itr_sc000868.1_g00001.1 6 GDKEWYFFCIRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSTGGEThhcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 83 789************************************95554556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.062	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	7.72E-33	4	108	IPR003441	NAC domain
Pfam	PF02365	1.7E-12	9	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
IGTHVGDKEW YFFCIRGRKY RNSVRPNRVT GSGFWKATGI DKPVYSTGGE THHCIGLKKS 60 LVYYRGSAGK GTKTDWMMHE FRLPPKLSDK NNNICQEAEV WTLCRIFKRT TNYKRCMPDW 120 RQQTSRQSTI VENNASSKNE AIMGAAQQEQ RNQFYASNDQ ISMALSSYSS SSNTTTFWNS 180 PKLLDNNHFF IGENPHWDEL KSVVDLATDP QSFCYSHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-30	6	115	69	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-30	6	115	69	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-30	6	115	69	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-30	6	115	69	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-30	6	115	72	174	NAC domain-containing protein 19
3swm_B	3e-30	6	115	72	174	NAC domain-containing protein 19
3swm_C	3e-30	6	115	72	174	NAC domain-containing protein 19
3swm_D	3e-30	6	115	72	174	NAC domain-containing protein 19
3swp_A	3e-30	6	115	72	174	NAC domain-containing protein 19
3swp_B	3e-30	6	115	72	174	NAC domain-containing protein 19
3swp_C	3e-30	6	115	72	174	NAC domain-containing protein 19
3swp_D	3e-30	6	115	72	174	NAC domain-containing protein 19
4dul_A	3e-30	6	115	69	171	NAC domain-containing protein 19
4dul_B	3e-30	6	115	69	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193017.1	1e-135	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	2e-60	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1U8HGS6	8e-71	A0A1U8HGS6_CAPAN; transcription factor JUNGBRUNNEN 1-like
STRING	XP_006484909.1	1e-70	(Citrus sinensis)
STRING	XP_006437126.1	1e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-61	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]