PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000880.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 269aa    MW: 29979.5 Da    PI: 6.2195
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000880.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.11.3e-59512215167
                    YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas......qllaaeshldeslkeell.eelkveeenlk 83 
                              +  +q+Cyv+C++C+til+vsvP +sl +vvtvrCGhCt +lsvn+++++      q la+ +h +++ + ++  ee+++e+++ +
  Itr_sc000880.1_g00003.1  51 DLQDQLCYVKCGHCTTILLVSVPRSSLCTVVTVRCGHCTAILSVNMMMMTtslvpfQFLASLDHHHHHHQWNQEgEEDQQEGDDSN 136
                              6789******************************************9998677777777777775544443333022333333332 PP

                    YABBY  84 snvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf.Pkih 167
                               n  k   +++s s e+  +n+de++p ++  v +PPekrqr+Psayn+fikeei+r+kasnP +sh++ fsaa+knWah+ P  h
  Itr_sc000880.1_g00003.1 137 NN-PKPAWEKNSSSFEEEHNNDDENSPVTQTaVTKPPEKRQRAPSAYNCFIKEEIKRLKASNPCMSHKQVFSAASKNWAHLrPSQH 221
                              22.2223333333333334555566664444599**********************************************955555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-5453216IPR006780YABBY protein
SuperFamilySSF470951.44E-9164220IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.2E-6169220IPR009071High mobility group box domain
CDDcd000843.59E-5177220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGTIYFSFPV GDRDENGIGV SGTGRGVPGW HPYIQVSGAG KNMSAMNPLL DLQDQLCYVK  60
CGHCTTILLV SVPRSSLCTV VTVRCGHCTA ILSVNMMMMT TSLVPFQFLA SLDHHHHHHQ  120
WNQEGEEDQQ EGDDSNNNPK PAWEKNSSSF EEEHNNDDEN SPVTQTAVTK PPEKRQRAPS  180
AYNCFIKEEI KRLKASNPCM SHKQVFSAAS KNWAHLRPSQ HHESEGGSYG QEEINVQSMY  240
SGTEQLLSQP TEAQRVQVPL DHKVEILPI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163561.11e-113PREDICTED: axial regulator YABBY 4
TrEMBLA0A2P5FMG14e-58A0A2P5FMG1_TREOI; YABBY protein
STRINGXP_009799428.12e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.18e-50YABBY family protein