PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000883.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 194aa    MW: 20705 Da    PI: 10.1077
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000883.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-15109161453
                              XCHHHCHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKka...eieeLeekvkeLeaeNkaLkkeleelk 53 
                              ++r +r++kNRe+A rsR+RK++   ++ +Le++v++L +eN +Lkk+l++l+
  Itr_sc000883.1_g00006.1 109 DRRHKRMIKNRESAARSRARKQEstaYTNQLEQEVAQLVEENCRLKKQLQQLR 161
                              689*******************6444789*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-14104161No hitNo description
SMARTSM003387.1E-11106188IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.634108161IPR004827Basic-leucine zipper domain
PfamPF001703.4E-13110161IPR004827Basic-leucine zipper domain
CDDcd147072.39E-23110165No hitNo description
SuperFamilySSF579591.22E-9110162No hitNo description
PROSITE patternPS000360113128IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEEVWKDINL SSLHHHTSGG GGGINFQDFL ARPFAKDQPP PSAAAAHTPD TMLNLNSVVP  60
DLHFLQPPGR AGSVSGFEAL ASASAGLNIA NGLAARNCRF VNSDDNSGDR RHKRMIKNRE  120
SAARSRARKQ ESTAYTNQLE QEVAQLVEEN CRLKKQLQQL RSVEAGGGGG GGGGVGHHNQ  180
VKKGTLSRTS TAPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177434.11e-92PREDICTED: bZIP transcription factor 27-like
TrEMBLA0A1S3YWP42e-50A0A1S3YWP4_TOBAC; FD4
TrEMBLA0A1U7YFI02e-50A0A1U7YFI0_NICSY; FDb
STRINGXP_009802867.13e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.27e-22basic region/leucine zipper motif 27