PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000886.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 90aa    MW: 10353.7 Da    PI: 9.6889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000886.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08753144
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             r +WT+   +l+ +a + + ++   +W  +ar +g g+++ ++k ++
  Itr_sc000886.1_g00005.1  7 RSSWTPRQNKLFEKALATFDKDtpdRWQNVARAVGGGKSADDVKRHY 53
                             789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.289561IPR017884SANT domain
SMARTSM007172.1E-7659IPR001005SANT/Myb domain
PfamPF002492.1E-6753IPR001005SANT/Myb domain
SuperFamilySSF466894.6E-12864IPR009057Homeodomain-like
CDDcd001676.77E-5957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSFRSSW TPRQNKLFEK ALATFDKDTP DRWQNVARAV GGGKSADDVK RHYEILLEDL  60
RRIESGDVPL PAYKTTADDE QRLLRFLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2710901193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165805.13e-59PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1731e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4A2851e-45A0A1S4A285_TOBAC; protein RADIALIS-like 4
TrEMBLA0A1U7WY031e-45A0A1U7WY03_NICSY; protein RADIALIS-like 4
STRINGXP_009779120.12e-46(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-32RAD-like 6