PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000886.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 348aa    MW: 38782.3 Da    PI: 5.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000886.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10176223455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Itr_sc000886.1_g00006.1 176 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 223
                              8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501758.686136IPR001995Peptidase A2A, retrovirus, catalytic
CDDcd000836.88E-10170227No hitNo description
SuperFamilySSF474594.84E-17170241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17172238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
METGAEMTVL ERHQARLKWH QEEQQQQQQI LTYLGGGNDQ LVTGIFSPPP EIQEFHSLGD  60
LVTRAMKPEN VWSDFSGLGL GQETDIETNY RISRTASSPA AVAATAAAVA EDGKRKEAPP  120
PENLKRRKAE KKQSTTEQSG NKNNNNNKKE SSSATSDDKK PDYIHVRARR GQATDSHSLA  180
ERVRREKISE RMKYLQDLVP GCNKITGKAG MLDEIINYVQ SLQRQVEFLS MKLAAVNPTI  240
DFNIDSFYTK EVYEVSGSNY PAEMFNSLQQ CSEMENGVNP SAMALRRTIS APISLLDSTA  300
NQIQASSAWD AEIQNLYAME FQQGRSTTSF LSQPFMGFIE GGNTRMAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113127KRKEAPPPENLKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166034.10.0PREDICTED: transcription factor bHLH63
TrEMBLA0A2G3BVW21e-110A0A2G3BVW2_CAPCH; Uncharacterized protein
STRINGEMJ010631e-104(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-60cryptochrome-interacting basic-helix-loop-helix 1