PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000887.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 371aa    MW: 41565.2 Da    PI: 6.722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000887.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06131151526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C++f++ G C+ Gd C FaHg
  Itr_sc000887.1_g00016.1 131 ACPDFRK-GNCRKGDACEFAHG 151
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.2E-6126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779127153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4131153IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5131151IPR000571Zinc finger, CCCH-type
SMARTSM003565.5161184IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.648161185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMIGERDHSY LAAQVTTWYS GDHTANIQFS SSPRDNAYAG EEFSPSIQND AALRAFQRYL  60
PSNSSDGEFD GGKDGEFPAD AYSCDQFRMY EFKVRKCARG RSHDWTECPF AHPGEKARRR  120
DPRACHYSGT ACPDFRKGNC RKGDACEFAH GVFECWLHPA RYRTQPCKDG LNCKRRVCFF  180
AHSPEQLRVL SPRYESYDGS PQRFGFDAAK TIHFVSSPES GSPPSESPPL SPMTAANSVN  240
SLSRSLGSNY VSDMVASLRQ LQLNKVKSMP SSWTVQIGSP VHGSPVLPVT RPGFRSLPST  300
PTQCIPRSHF DLWEESLREE EDEIPMERVE SGRGLRARMF QKLSEENPLD GYPNPSDAPN  360
PDVGWVSDLI N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192664.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-114C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3Y1A10.0A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009608132.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-106C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]