PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000887.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 471aa    MW: 52022.9 Da    PI: 6.9614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000887.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.62.1e-35491911128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+Ptd+el+ e+L++kv +k+      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r++
  Itr_sc000887.1_g00023.1  49 LPAGVKFDPTDQELI-EHLEAKVVAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKI 132
                              799************.99****999885665443333333666646**********.555666799******************73 PP

                      NAM  79 k........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +        + +W++tgk+++v+  +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Itr_sc000887.1_g00023.1 133 QtecdlqggETRWHKTGKTRPVML-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                              334555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-3941210IPR003441NAC domain
PROSITE profilePS5100533.58649210IPR003441NAC domain
PfamPF023655.6E-1650191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNKNSSQVGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE AAKPDWVGLP AGVKFDPTDQ  60
ELIEHLEAKV VAKESKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMLNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSS AAAATAAERS ITSGGEDPAS  240
KRDSGGSGSC SSSKDNNNMN IHSHGDELSV AVGAAMSSYS AMEIQQLKAT ADHFSFLPFR  300
KNFDEAGIAV GAEASMGREV PATGTCEGRD IAADPHRGHH HVTHDPHHPH HHHHQIAAAF  360
HNISRPSHTI SAIISPPPPL HHHASVILDD DPFHVPRIIL PADNYQQSQQ QQQHHKLGGR  420
STSELEELIM GCTTTSSDIK EGSSMAANQQ EAEWLKYTPF WPDPDNPDHH G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124719113140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191566.10.0PREDICTED: NAC domain-containing protein 102
RefseqXP_019191567.10.0PREDICTED: NAC domain-containing protein 102
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A484KDT60.0A0A484KDT6_9ASTE; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]