PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000888.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 1303aa    MW: 148351 Da    PI: 7.0778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000888.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.7e-1211671192126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                               yk  +C+++ +tG+C yGd+CkF+H+
  Itr_sc000888.1_g00006.1 1167 YKADICKDYKETGYCGYGDSCKFMHD 1192
                               8899*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.955690IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.51491122IPR002885Pentatricopeptide repeat
PfamPF130411.4E-10122169IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.827123157IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.2E-6125159IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.634158192IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.272193223IPR002885Pentatricopeptide repeat
PfamPF015350.78198220IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.914224259IPR002885Pentatricopeptide repeat
PfamPF015350.0073226249IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.1E-4228356IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484529.97E-7232264IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.774260294IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.991295325IPR002885Pentatricopeptide repeat
PfamPF015350.11300326IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.402326360IPR002885Pentatricopeptide repeat
PfamPF015351.9E-5328355IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-5328355IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.1E-4389461IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.739392422IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.97E-7399584IPR011990Tetratricopeptide-like helical domain
PfamPF130419.2E-15423470IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.107423457IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-11425458IPR002885Pentatricopeptide repeat
SuperFamilySSF484523.51E-6435453IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.144458493IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.191494528IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-7494495IPR011990Tetratricopeptide-like helical domain
PfamPF015350.011497519IPR002885Pentatricopeptide repeat
SuperFamilySSF484523.51E-6523584IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.7E-7527584IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.432560594IPR002885Pentatricopeptide repeat
PfamPF015351.1564591IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-7668689IPR011990Tetratricopeptide-like helical domain
PfamPF119552.2E-11690741IPR021099Plant organelle RNA recognition domain
PfamPF119553.3E-8742819IPR021099Plant organelle RNA recognition domain
PfamPF119552.7E-17818878IPR021099Plant organelle RNA recognition domain
SuperFamilySSF902295.76E-911631197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.32811661194IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-811661193IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-911671192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-1211671197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-1212261284IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.16E-1212421285No hitNo description
PfamPF139208.1E-812421283No hitNo description
CDDcd001627.22E-812431284No hitNo description
SMARTSM001841.8E-412431280IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.40912431281IPR001841Zinc finger, RING-type
PROSITE patternPS00518012581267IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1303 aa     Download sequence    Send to blast
MLMKLLCSSR TKRHYSTFLS PASRESEIIQ LCNSGHLLKA LKLLSSLGSP DGITAKPILY  60
ATLVQGCTKA NFFNLGLQFH AHVIKAGLDV DRFVGNSLLA LYFKLGRNFF ETRRLFDGLV  120
YKDVVSWSSI ISGYIRVGKP QLSLALYVEM LDFGVEPNAF TLSSLIKACS ELQELRLGQC  180
FHGAVITCGF DDSKVIVSGL IDMYGKNFEA GDARKLFYEM PLVDDFCWTS VISALTKNDL  240
FGEALKIFHS GHRNHKLLPS AHTFGSVLTA VGNLGRLKQG KQLHAKVVAL GICGDIFVDS  300
SLVDMYAKCG LINESRRVFD GMAERNSVSW CALLTGYCHK GDFDTVIELF RMMEEVELYS  360
FGTVIRACSG LAALKPGKEV HCQFLRRGGF RDIVVESALV DLYAKCGCFD AAYNVFVRMP  420
ARNVVSWNSM ISGFAQNGRG EEAIKMFNKM ISAGIKPDYI TFVSVISACS HTGLVDTGRK  480
YFGLMMDDYK IKPKLEHYGC MIDLLCRAGE LEEAECLINS SEFKNDPSLW TCLLGACSNT  540
TDPTVAQRIA KKMIELKPEY HLSYVYLSNV YKAIGRWDDA LKVWWEMRHK RVKKIPGKSW  600
VESNKNLGHL STNPSEENNS EVVESLGNLR KTRLPISPIR TVVQRREELP LDNVIQREKK  660
LKLVLKLRKL MMSQPNRVMA LRELGAYSLK FKLTPDAERL YLEELQARNE MEDLLVIKLR  720
KLLMMSADKR ILLEKIAHLK RPTLELTHWD SELVLCCRAS EEENRQQDLS ERILIIDSVP  780
RFNWVKLPKS LNLSKGEMRR ICQFRDMPYI SPYSDFSEIR FSQQLRGMLI RHPDMFYVSL  840
KGARDSVFLP EAYHDSQLIE KDRLLLIKEK MRSLVSVQRF AWRGIGKCDA DKIDGTKPKD  900
EVSGEEGQEG QEGLDIDNLL SDGFDEDGED YDDNGEDFED NWSYEDDDLP PNFTDDDEII  960
NLENVKSSRM VDDPIKKYEK ILVPVFPDGR PRERCLLLGD PYQMVLPLLE SERNYLYKLH  1020
FNFVGHVCSF FRKPSKAKNI RKRTAIEEGE NEDGDSKDET SVVFNKKKSA VADNKLHFST  1080
GPSKREITSE SDAGSKKSLF QFESSREIQV QNDNKATATL ETETEFSKDA RAIRERVLKQ  1140
AEEALKGKNE NTGDKKLYKG IHGYTDYKAD ICKDYKETGY CGYGDSCKFM HDRGDYKSGW  1200
QLEKEWDEAE KAKKRRMEMG MLDDDESAEQ SDDDEDDAIP FACFICRQPF VDPVVTKCKH  1260
YFCEHCALKH HAKNKKCFVC NQPTLGIFNT AFEIRKKMAA EGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-67315923337PLS9-PPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-112C3H family protein