PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000891.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 512aa MW: 56194.7 Da PI: 6.8583

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000891.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	203	244	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ L++ ++L Itr_sc000891.1_g00003.1 203 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLSQLEQEL 244 5889*************************8665555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0052	200	253	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-8	202	246	No hit	No description
PROSITE profile	PS50217	9.071	202	244	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-8	203	244	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.0E-7	204	246	No hit	No description
CDD	cd14708	7.19E-21	204	254	No hit	No description
PROSITE pattern	PS00036	0	207	222	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-32	285	359	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MAASQRVGET GVTGTSSQHH HNMPYELLRG LNNPTTTPSF MYHSTPNKEG PAAFDFGELE 60 EAIVLQGVKI NNNDEAKASL YAAATLEMFP SWPTRSSLHT PIPIPRGSSR SGEEESGDSG 120 SGVNTFSSRA EGPDSPISTR PSSHLSQPST QNHQLEIIMA SDDSPRTTTG VSETDHPEAA 180 ASKQPTHDKR RGAGSTSDRV LDAKTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLSQL 240 EQELHSARSQ GLFLGGGAAV GAGTSSGGAI FDMEYARWLD DDHRHISELR TALQAHLSDG 300 ELRVVVDGYI GHYDEIFRLK GEAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSELIKMLT 360 GKLDPLTEQQ VVGIYGLQHS SQQAEEALTQ GLDQLQQSLV ETIAVGSAAG DGGVHHMAMA 420 IGKLANLEGF VRQADNLRQQ TLHQLHRILT VRQAARCFLM IGEYYNRLRA LSSLWASRPR 480 ETMIGGDDSS CQTTTTHLQM VQFSHQNHFS NF

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MAASQRVGET GVTGTSSQHH HNMPYELLRG LNNPTTTPSF MYHSTPNKEG PAAFDFGELE  60
EAIVLQGVKI NNNDEAKASL YAAATLEMFP SWPTRSSLHT PIPIPRGSSR SGEEESGDSG  120
SGVNTFSSRA EGPDSPISTR PSSHLSQPST QNHQLEIIMA SDDSPRTTTG VSETDHPEAA  180
ASKQPTHDKR RGAGSTSDRV LDAKTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLSQL  240
EQELHSARSQ GLFLGGGAAV GAGTSSGGAI FDMEYARWLD DDHRHISELR TALQAHLSDG  300
ELRVVVDGYI GHYDEIFRLK GEAAKSDVFH LITGMWTTPA ERCFLWMGGF RPSELIKMLT  360
GKLDPLTEQQ VVGIYGLQHS SQQAEEALTQ GLDQLQQSLV ETIAVGSAAG DGGVHHMAMA  420
IGKLANLEGF VRQADNLRQQ TLHQLHRILT VRQAARCFLM IGEYYNRLRA LSSLWASRPR  480
ETMIGGDDSS CQTTTTHLQM VQFSHQNHFS NF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163297.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1J6IMX9	0.0	A0A1J6IMX9_NICAT; Tgacg-sequence-specific dna-binding protein tga-2.1
STRING	XP_009772593.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]