PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000904.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 169aa MW: 19308.7 Da PI: 8.4813

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000904.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	19	70	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le F+ n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k Itr_sc000904.1_g00004.1 19 KRLTQDQVRLLEISFKANSKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWK 70 579************************************************9 PP
2	HD-ZIP_I/II	111.7	4.7e-36	18	108	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +rl+++qv+lLE sF++++kL+p+rK++la+eLgl prqva+W+qn+RAR+k++ lE+d++a+++++ ++++nerL kev++Lr Itr_sc000904.1_g00004.1 18 NKRLTQDQVRLLEISFKANSKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDHKAMQQRLSGVVADNERLGKEVQRLR 103 69************************************************************************************ PP HD-ZIP_I/II 89 eelke 93 eel++ Itr_sc000904.1_g00004.1 104 EELSR 108 *9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.3E-17	15	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.96E-17	17	79	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-16	19	70	IPR001356	Homeobox domain
CDD	cd00086	3.18E-15	20	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-20	20	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.467	20	72	IPR001356	Homeobox domain
PRINTS	PR00031	5.4E-6	43	52	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.4E-6	52	68	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDYFNSQQAR KSLLKCHNKR LTQDQVRLLE ISFKANSKLD PDRKSQLAQE LGLPPRQVAI 60 WYQNKRARWK SQSLEVDHKA MQQRLSGVVA DNERLGKEVQ RLREELSRTQ EMLFSLNAAA 120 YSSLSSSGDE VGSCSDLLHD SKELYACLID DHEGQIGKSA DAHNFFRLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169031.1	1e-101	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1J6IZQ9	6e-72	A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
TrEMBL	A0A2G2XF04	7e-72	A0A2G2XF04_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3D5C9	7e-72	A0A2G3D5C9_CAPCH; Uncharacterized protein
STRING	XP_009800499.1	2e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-29	homeobox protein 52