PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000904.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 654aa    MW: 72600.5 Da    PI: 8.3404
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000904.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.38.4e-2561162199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
  Itr_sc000904.1_g00005.1  61 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGITWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAV 145
                              99****************************963.3445679********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F ++   ++el+++++r+
  Itr_sc000904.1_g00005.1 146 LFLRS--GDGELRLGIRRA 162
                              ***54..688899*99986 PP
2Auxin_resp78.31.9e-262873511882
               Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                              r + s+Fvv+++k++++l +++++G Rfk++feted++ rr++G+v+gv d+dpvrWp+SkWrsL
  Itr_sc000904.1_g00005.1 287 RDCLSKFVVPYRKFSRSLLHSFAPGVRFKLHFETEDAADRRYTGLVIGVGDVDPVRWPGSKWRSL 351
                              66789**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4253163IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-4153165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-2259161No hitNo description
SMARTSM010195.3E-2461163IPR003340B3 DNA binding domain
PfamPF023621.2E-2261162IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53561163IPR003340B3 DNA binding domain
PfamPF065075.3E-22287351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MENIRWKHFK EYLLVVITGN ESSRLLATFI EQKWRNGEVE VDNEEVDTEG DGKSSTPPHM  60
FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVARDLHGIT WKFRHIYRGQ  120
PRRHLLTTGW SAFVNKKKLV SGDAVLFLRS GDGELRLGIR RAAQAKFEVR MMMMSGLIDL  180
NTVNNDDVDG GEETASPDNS DLTESSPPPA AGLLCMELWH ACAGPLISLP KKGSAVVYLP  240
QGHLEHLSDY PAVAYNLPPH VFCRVVDVKL HFSVCYATIM MHKLLMRDCL SKFVVPYRKF  300
SRSLLHSFAP GVRFKLHFET EDAADRRYTG LVIGVGDVDP VRWPGSKWRS LLVRWDDPDD  360
TRHNRVSPWE IEPTGTVTGP INVVVPAAKR TRMEDFPVHG DRTVVLDIRN PSRLPVLQGQ  420
EVFPVNKPYD GSDIDPQRAV YFPGFDSSGI STRGRNIRAL LGDAGKSHES IGFAESCRFN  480
KVLQGQETYL SPPYRRGIAT NQAPEPHRSG IIVGIQVPSH STRWSTPIPN HHSPMQLLQP  540
SSPLVHVSSP PSVLMFQQAS SPAPPTFHKQ SGFSHLLSPQ SSCRIFGFPL SEGRSAASDK  600
ERDPFHSPPS HGETTTPLGG NEARILLKPQ AISGAMGSSY PKAASREVLL DIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-4454372151388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170238.10.0PREDICTED: auxin response factor 3-like
RefseqXP_019170239.10.0PREDICTED: auxin response factor 3-like
RefseqXP_019170240.10.0PREDICTED: auxin response factor 3-like
STRINGSolyc02g077560.2.12e-93(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.12e-61ARF family protein