PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000904.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 303aa    MW: 33109.9 Da    PI: 8.805
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000904.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.3e-1755114256
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                              + R+++++eq+++Le+ F++   +p +ee++ + +kl    ++ +++V++WFqNr+ + k
  Itr_sc000904.1_g00015.1  55 KARWNPKPEQIRILEAIFNSgMVNPPREEIRNIRAKLqeygQVGDANVFYWFQNRKSRTK 114
                              89*****************99*************************************99 PP
2Wus_type_Homeobox110.59e-3654116264
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                              +++RW+P+peQi+iLe++++sG+++P++eei++i+a+L+eyG+++d+NVfyWFQNrk+R ++k
  Itr_sc000904.1_g00015.1  54 PKARWNPKPEQIRILEAIFNSGMVNPPREEIRNIRAKLQEYGQVGDANVFYWFQNRKSRTKHK 116
                              689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.33351116IPR001356Homeobox domain
SuperFamilySSF466893.98E-1252121IPR009057Homeodomain-like
SMARTSM003892.2E-753120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-653118IPR009057Homeodomain-like
CDDcd000865.77E-854116No hitNo description
PfamPF000462.8E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSSKRHWPS MFKSKPCNTL HPWHRHRDIL NSSLKPPSTP TSGGGSEERS APEPKARWNP  60
KPEQIRILEA IFNSGMVNPP REEIRNIRAK LQEYGQVGDA NVFYWFQNRK SRTKHKLRHV  120
QTSTKSPPQQ NPSPPLIAGG PSPSSSSSSS EKSSPNDSAN HNSFFHARNE LLTEPQPPSI  180
HQTSTGFASS DGGAFTQSLC FSTVSDQTTV ENSPNLLLTE LMGFAAAVPP PTTCGGVTGP  240
AKSTVFINDL AFEVAAAHFN VKAAFGDDAV LIHYSSGQPL LTNEWGLTLD PLQDGAYYYL  300
VRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169099.10.0PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLA0A2I4FPE82e-90A0A2I4FPE8_JUGRE; WUSCHEL-related homeobox 9-like
STRINGEOY281175e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.14e-65WUSCHEL related homeobox 8