PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000909.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 230aa    MW: 26301.8 Da    PI: 10.3037
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000909.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.57.4e-32291352102
                              HHHHHHHHHCTG...............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
             HSF_DNA-bind   2 Flkklyeilede...............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 
                              Fl k+y++le+e                 ++++sw+ +g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkkv +++   
  Itr_sc000909.1_g00027.1  29 FLVKTYDLLEEEerrrqeggvenngraPAEKIVSWNGQGTGFVVWSPPEFSQLLLPRYFKHNNFSSFIRQLNTYGFKKVASKR--- 111
                              999*******76777777777777777999**************************************************999... PP

                              TTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  73 kskekiweFkhksFkkgkkellekikrkks 102
                                    weF+h++F+kg+k+ll +i rkk 
  Itr_sc000909.1_g00027.1 112 ------WEFQHDKFRKGSKHLLIEISRKKV 135
                              ......**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3421128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-4125133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-2627133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-2829133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAADAPAVAG GRQPLPSSSS SRVKCPAPFL VKTYDLLEEE ERRRQEGGVE NNGRAPAEKI  60
VSWNGQGTGF VVWSPPEFSQ LLLPRYFKHN NFSSFIRQLN TYGFKKVASK RWEFQHDKFR  120
KGSKHLLIEI SRKKVEPSGF PAYLRANEEA STSSMAAATT SQVNINTRKL LMEENKNLRK  180
ERMELQTQIA HFKTLEMRLL ECLSTYMGNH NHHHHRQQHS TINLGDSLNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-14913310129Heat shock factor protein 1
5d5v_B1e-14913310129Heat shock factor protein 1
5d5v_D1e-14913310129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162267.11e-109PREDICTED: heat stress transcription factor B-2a-like
TrEMBLI3SY632e-80I3SY63_LOTJA; Uncharacterized protein
STRINGSolyc02g078340.2.12e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-38heat shock transcription factor B2A