PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000918.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 296aa MW: 34340.9 Da PI: 6.5323

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000918.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	100	2.3e-31	30	119	2	100
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F++k+y ++e+++++ ++sw+++gn fv++d ++fa ++Lp yFkh+ f+SF+ QLn+YgFkk + e+ eF+h++F+ Itr_sc000918.1_g00017.1 30 FVRKTYAMVENHQTDGIVSWNSTGNGFVIWDAHKFAAEILPCYFKHNTFSSFICQLNTYGFKKASWEK---------YEFRHEWFQ 106 9*************************************************************9999.........78*** PP XXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrk 100 kg+k+ l+ki+r Itr_sc000918.1_g00017.1 107 KGRKRWLRKIRRS 119 ********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.0E-32	23	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.7E-41	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.3E-29	26	118	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-27	30	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.1E-15	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.1E-15	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.1E-15	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLVLGKDSGE KSGNGEDRSQ PRAAVSPTPF VRKTYAMVEN HQTDGIVSWN STGNGFVIWD 60 AHKFAAEILP CYFKHNTFSS FICQLNTYGF KKASWEKYEF RHEWFQKGRK RWLRKIRRSG 120 RTDRPARRQD HQQHQQNGEE MSVLRMEKEI DEMQGVQRGI LMEIKRLQEQ QEILAKELLG 180 MIKNAPSLGG KRRQLPKIMA ESLLESICEL DSSGVMQEKE INENIRNEID DPNGKTPEEQ 240 DITRLETYDG LNMEKLVEER PDIVIGLDDL FEGPVDWRNY IKQLGEKGAD NLRIMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-18	30	118	29	128	Heat shock factor protein 1
5d5v_B	8e-18	30	118	29	128	Heat shock factor protein 1
5d5v_D	8e-18	30	118	29	128	Heat shock factor protein 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168909.1	0.0	PREDICTED: heat stress transcription factor B-3-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	4e-38	heat shock transcription factor A1D