PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000922.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 391aa MW: 43141.9 Da PI: 6.5095

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000922.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	186	244	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt a+C vkk+ver ed ++v++tYeg+H+h+ Itr_sc000922.1_g00013.1 186 LDDGYRWRKYGQKAVKNTHFPRSYYRCTAASCGVKKRVERWCEDASIVVTTYEGTHTHP 244 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-31	171	246	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	178	246	IPR003657	WRKY domain
PROSITE profile	PS50811	29.023	181	246	IPR003657	WRKY domain
SMART	SM00774	1.8E-33	186	245	IPR003657	WRKY domain
Pfam	PF03106	2.0E-24	187	244	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MENKFDDLII KRDSMGIPVF SDEIPSTSPA ALQQALLGEA DKTTYSLGFL DAQHNNNNYY 60 YNTIFDLIIH THTHTPPPQH QSIPPPPSHS NSPSPLASTS LLESSEVVNA TPPTPNSSSL 120 SSSSNEATPA ANDDQHQTSK TVEEDEEEEE DKTTKKQVKP KNKKNAKKRQ REARFAFMTK 180 SEVDQLDDGY RWRKYGQKAV KNTHFPRSYY RCTAASCGVK KRVERWCEDA SIVVTTYEGT 240 HTHPCPIKHT AGSLGIGIMP PNTSSFFPTT TTAAAAQEGG ITSSSSSSSY CFEELDNNNV 300 ILIPSRPSSQ QLHYPLQHTS TYFQTPTYIS NGAAALLWGR TDSISTTTNL LPALPQGLPP 360 SLIPDHGLLQ DMVPFQMVKQ EERSSPAKKD I

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MENKFDDLII KRDSMGIPVF SDEIPSTSPA ALQQALLGEA DKTTYSLGFL DAQHNNNNYY  60
YNTIFDLIIH THTHTPPPQH QSIPPPPSHS NSPSPLASTS LLESSEVVNA TPPTPNSSSL  120
SSSSNEATPA ANDDQHQTSK TVEEDEEEEE DKTTKKQVKP KNKKNAKKRQ REARFAFMTK  180
SEVDQLDDGY RWRKYGQKAV KNTHFPRSYY RCTAASCGVK KRVERWCEDA SIVVTTYEGT  240
HTHPCPIKHT AGSLGIGIMP PNTSSFFPTT TTAAAAQEGG ITSSSSSSSY CFEELDNNNV  300
ILIPSRPSSQ QLHYPLQHTS TYFQTPTYIS NGAAALLWGR TDSISTTTNL LPALPQGLPP  360
SLIPDHGLLQ DMVPFQMVKQ EERSSPAKKD I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-23	179	246	10	77	Probable WRKY transcription factor 4
2lex_A	4e-23	179	246	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174085.1	1e-139	PREDICTED: probable WRKY transcription factor 48
TrEMBL	M1ATF4	2e-58	M1ATF4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400029812	4e-59	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-37	WRKY DNA-binding protein 48