PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000939.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 730aa    MW: 79133.4 Da    PI: 5.3911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000939.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07307327526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ G C++Gd C +aHg
  Itr_sc000939.1_g00009.1 307 PCPDFRK-GACRRGDMCEYAHG 327
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.49E-1933161IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-2040161IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-1270152IPR020683Ankyrin repeat-containing domain
CDDcd002042.01E-1771161No hitNo description
PROSITE profilePS5029719.06783158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007983113IPR002110Ankyrin repeat
PROSITE profilePS5008813.544118153IPR002110Ankyrin repeat
SMARTSM002484.5E-6118150IPR002110Ankyrin repeat
PRINTSPR014151.7E-6119134IPR002110Ankyrin repeat
PRINTSPR014151.7E-6137151IPR002110Ankyrin repeat
SMARTSM003564.0E-6302328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4306329IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5307327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582307329IPR000571Zinc finger, CCCH-type
SMARTSM0035682337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MCSGPDQSNS SSSTNQSNSD TKLSMDSNQL TVVTDDCFSS FLELAANNDV EAFKRSIEHE  60
PSAVDEVGLW LVRKKGSKQI VNEERTPLMV AATYGSVDVL KLIISQPGVD VNQTCGPDGC  120
TALHCAASGG SINATEVVKL LLSSGADPNI EDVNGQRPAD VIVVPLKLPG ARASLEELLL  180
NNMSDGPVGE CHLQVSITTS TSSPVLSSSP ENGSPCSPSD LVSSPMASEF SDVPANSAPE  240
KKEYPIDPSL PNIKNSIYST DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDDISCD RRVCFFAHTP  360
EELRPLYVST GSAVPSPRSA AATASVMDMA GALSLMPGSP SSHSVMSPAF NQPMSPTANG  420
MPNSSMAWPQ PNVPTLHLPG SNLQSSRLRS SLNARDIPLE DLNMLQDFDG QQLLLNDLAY  480
FSQSRPNSTT LSRSGCSKTL TPSNLEELFS AEITSSPRYS DQAAASGVFS PSHKSAVFNQ  540
FQQQQSMLSP TNGNVFSPKN VEHPLLQASF AVSSPGMMSP RTMEPISPMS SQLSAFAQRE  600
KQHQQIRSLS SRDLGSRNAS MIGSPVSNSW SNWGSPNTRI DWSVNGDELG RLRKSSSFEK  660
LNSNGDEPDL SWVQSLVKES PPEMKDKLTA RTSGAVPSGE GLKSNSQTDS IDHSVLGAWL  720
EQMQLDQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150843.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A484LND70.0A0A484LND7_9ASTE; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]