PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000950.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 183aa MW: 19785 Da PI: 6.1064

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000950.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105.4	3.8e-33	29	117	6	94
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 + +P++ v +im++++P a+i+++aketvq+cv+efi +vt++a++++++e+rkt++++dl+wa+ lG+ y+e+l+ +++ yr Itr_sc000950.1_g00001.1 29 NDIPLSTVLKIMREAIPRSARIADEAKETVQKCVTEFIHYVTAKANERAKQERRKTVTTEDLIWAMRALGLGSYAEELTDFITDYR 114 569*********************************************************************************** PP NF-YB 92 ele 94 ++ Itr_sc000950.1_g00001.1 115 ATH 117 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.6E-34	30	119	IPR009072	Histone-fold
SuperFamily	SSF47113	1.03E-27	31	124	IPR009072	Histone-fold
Pfam	PF00808	4.2E-22	31	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.7E-7	58	76	No hit	No description
PRINTS	PR00615	3.7E-7	77	95	No hit	No description
PRINTS	PR00615	3.7E-7	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MNADDNTNAN MNADNAAAAG PQRRSTAQND IPLSTVLKIM REAIPRSARI ADEAKETVQK 60 CVTEFIHYVT AKANERAKQE RRKTVTTEDL IWAMRALGLG SYAEELTDFI TDYRATHVHG 120 RAASHPLPPP PVQQVPFMQG FPVPGFVPGP VNDGAGGSAS SSSPSFGGDY FFDTSYPPTN 180 FNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-26	31	114	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155265.1	6e-71	PREDICTED: nuclear transcription factor Y subunit B-4-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14746	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-30	NF-YB family protein