PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000950.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 170aa MW: 18243.5 Da PI: 8.5018

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000950.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105.6	3.2e-33	27	116	5	94
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++ +P++ v +im++++P a+i+++aketvq+cv+efi +vt++a++++++e+rkt++++dl+wa+ lG+ y+e+l+ +++ y Itr_sc000950.1_g00002.1 27 QNDIPLSTVLKIMREAIPRSARIAEEAKETVQKCVTEFIHYVTAKANERAKQERRKTVTTEDLIWAMRALGLGSYAEELTDFITDY 112 5679********************************************************************************** PP NF-YB 91 rele 94 r ++ Itr_sc000950.1_g00002.1 113 RATH 116 *875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.4E-34	28	118	IPR009072	Histone-fold
Pfam	PF00808	4.1E-22	30	93	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.0E-27	30	124	IPR009072	Histone-fold
PRINTS	PR00615	3.1E-7	57	75	No hit	No description
PRINTS	PR00615	3.1E-7	76	94	No hit	No description
PRINTS	PR00615	3.1E-7	95	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MHAGENNANM NADNAAAAGP QRRRTAQNDI PLSTVLKIMR EAIPRSARIA EEAKETVQKC 60 VTEFIHYVTA KANERAKQER RKTVTTEDLI WAMRALGLGS YAEELTDFIT DYRATHVHGR 120 AASHPLPPPP VQQVPFNQGF PVPGFAAGPM NDGAGGSASS FSSPSFGGGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-26	30	113	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155265.1	7e-64	PREDICTED: nuclear transcription factor Y subunit B-4-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14746	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	5e-30	NF-YB family protein