PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000963.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 405aa    MW: 45287 Da    PI: 6.1969
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000963.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-083433762154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp++e++++L +++gL+ +q+ +WF N+R +
  Itr_sc000963.1_g00003.1 343 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 376
                              469*****************************87 PP
2ELK27.66.6e-10297318122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELKh+L+++Y+++++++++E++
  Itr_sc000963.1_g00003.1 297 ELKHELKHGYKEKIVDIREEIL 318
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19131175IPR005540KNOX1
PfamPF037903.6E-17133174IPR005540KNOX1
SMARTSM012565.4E-25185240IPR005541KNOX2
PfamPF037911.3E-18189239IPR005541KNOX2
PROSITE profilePS512139.551297317IPR005539ELK domain
PfamPF037893.1E-5297318IPR005539ELK domain
SMARTSM011880.0023297318IPR005539ELK domain
PROSITE profilePS5007111.726317380IPR001356Homeobox domain
SMARTSM003892.4E-11319384IPR001356Homeobox domain
SuperFamilySSF466893.98E-16319383IPR009057Homeodomain-like
CDDcd000861.76E-11320379No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25324381IPR009057Homeodomain-like
PfamPF059201.1E-17337376IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAFQDHFSQE MALQQQQQQQ NAVVLHSMLP ADHHSSSPKS PPSTWLNTSL LRQHSHHFSA  60
PADAAAAAAA GTSFLHLQTT NSDSSTSNHW LSPTGEGPKS DAVSEPMNNN NNNNSSNNNA  120
NNSEESSWER EKCKADILNH PLYDQLLSAH VSCLRIATPV DQLPRIDAQL AQSQNVVAKY  180
SVLGQGQQPL DDKDLDQFMT HYVLLLSSFK EQLQQHVRVH AMEAVMACWE LEQSLQSLTG  240
VAPGEGTGAT MSDDDDEQAD SDANFFDGGL DGSDTMGFGP LVPTESERSL MERVRQELKH  300
ELKHGYKEKI VDIREEILRK RRAGKLPGDT TSVLKAWWQS HSKWPYPTEE DKARLVQETG  360
LQLKQINNWF INQRKRNWHS NPSSSSSQKS KRKSAGEKMS SEHFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12320385873Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197988.10.0PREDICTED: homeobox protein knotted-1-like LET12
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A484KET10.0A0A484KET1_9ASTE; Uncharacterized protein
TrEMBLA0A484MGB80.0A0A484MGB8_9ASTE; Uncharacterized protein
STRINGXP_009770424.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-153KNOTTED1-like homeobox gene 3