PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000980.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 358aa    MW: 39770.5 Da    PI: 7.6856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000980.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08135155526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+ f++ G+Ck Gd C +aHg
  Itr_sc000980.1_g00016.1 135 ACPEFRK-GQCKNGDACEYAHG 155
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-5130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009131157IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6135155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4135157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343165189IPR000571Zinc finger, CCCH-type
SMARTSM0035611165188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMMMIRQSTH PHQTVQVPPW DFVDDPTADI HSSFPWGSNG GGNASANAVS PDSGFDALTA  60
LQRYLPSNVN DVVSDSDELD VPVDAFSCDQ FRMYEFKVRK CARGRSHDWT ECPFAHPGEK  120
ARRRDPRKFH YSGTACPEFR KGQCKNGDAC EYAHGVFECW LHPARYRTQP CKDGTQCRRR  180
VCFFAHTPDQ LRVLPQASPR SHHAAEPCDS YDGSPSRRAG FDSLFSKAAF GSYSPPLSPQ  240
SESPPMSPSA SISLNSVSGL VESMRNMQIG KGRMGISMSM SPPSWGLQIG SPRSPSTLRP  300
VFMSLPNTPT QAPTRSGPGV FDLWETSCEE EPVMERVESG RDLRARMYAR LSKENSLH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184932.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-111C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A328E4L60.0A0A328E4L6_9ASTE; Uncharacterized protein
STRINGXP_009784195.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]