PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000985.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 113aa MW: 12153.2 Da PI: 9.8978

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000985.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	108.4	4.3e-34	18	101	18	100
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 h+lPlarikki+k + dvkmis eaP+++skacelfi elt r+w a + krrtl+k d+a+av td+fdflv+ v d+ Itr_sc000985.1_g00002.1 18 PHSLPLARIKKIMKkSSSDVKMISGEAPIVFSKACELFIEELTKRAWTVAMQGKRRTLHKEDVASAVIATDVFDFLVNLVSDDQ 101 599********72578**********************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-31	15	84	IPR009072	Histone-fold
SuperFamily	SSF47113	3.14E-27	16	93	IPR009072	Histone-fold
Pfam	PF00808	2.5E-22	20	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MRQAGAFSGM LAGGKTGPHS LPLARIKKIM KKSSSDVKMI SGEAPIVFSK ACELFIEELT 60 KRAWTVAMQG KRRTLHKEDV ASAVIATDVF DFLVNLVSDD QSANSVCVPG LSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-32	19	97	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628926.1	2e-61	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_016485723.1	2e-61	PREDICTED: nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	2e-31	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1S4BA97	5e-60	A0A1S4BA97_TOBAC; nuclear transcription factor Y subunit C-2-like
STRING	XP_009628926.1	8e-61	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12881	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-34	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]