PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000988.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 209aa    MW: 22506.7 Da    PI: 8.2126
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000988.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.5e-282104198
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlrr+C  +C+l+p++     +++q++++ +v k+FG+s ++++++++p ++r+++++sl+yeA+ r+ +Pv+Gavg+++
  Itr_sc000988.1_g00003.1   2 SCNGCRVLRRGCGVNCILRPCLeeidnAQAQANATLFVSKFFGRSDLMSFISSVPITRRPALFKSLLYEACGRTVNPVSGAVGLLS 87 
                              6*********************8888777889****************************************************** PP

                   DUF260  82 klqqqleqlkaelallk 98 
                              +++++++  ++e++l++
  Itr_sc000988.1_g00003.1  88 TGNWHVCVQAVETVLAG 104
                              ********999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.41107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR RGCGVNCILR PCLEEIDNAQ AQANATLFVS KFFGRSDLMS FISSVPITRR  60
PALFKSLLYE ACGRTVNPVS GAVGLLSTGN WHVCVQAVET VLAGGALQPI ATDFLSPPSF  120
DEASRIFLHE GAWKIPEVSV VTQSQPSDPR KHQMPTAGRG AGNNRKRVSS AAFASETETE  180
TSSEVYESGC RSVRDIVGGK EPKLLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174311.11e-124PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE85e-56LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A484LFN04e-80A0A484LFN0_9ASTE; Uncharacterized protein
STRINGSolyc04g077990.2.12e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.18e-58LOB domain-containing protein 39