PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000992.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 338aa    MW: 37918.3 Da    PI: 6.3841
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000992.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.4e-114289154
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                             s++kGV    ++g W A+I+       + +r++lg+f t+e+Aa+a++ a+ +l+
  Itr_sc000992.1_g00001.1 42 SRFKGVV-GQQSGNWGAQIYA------NhQRIWLGTFKTEEDAAAAYDSAAIRLR 89
                             6899996.5668******999......44**********************9986 PP
2B387.51.1e-27163255184
                              EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                              f+k+ltpsdv+k++rlv+pkk+a ++           g   + +++l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk++g+k
  Itr_sc000992.1_g00001.1 163 FKKELTPSDVGKLNRLVIPKKHALKFfprtldaaaedG--GADDVELVFYDKAMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKGIK 246
                              89***************************999999643..34789***************************************** PP

                              TT-EEEEEE CS
                       B3  76 egDfvvFkl 84 
                              ++D+v+F+ 
  Itr_sc000992.1_g00001.1 247 ARDVVIFSA 255
                              *******93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-1242100No hitNo description
SuperFamilySSF541719.15E-154299IPR016177DNA-binding domain
PfamPF008472.3E-54389IPR001471AP2/ERF domain
SMARTSM003801.3E-1943104IPR001471AP2/ERF domain
PROSITE profilePS5103217.1744398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-174398IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-30160256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-26162257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-25162264No hitNo description
PfamPF023629.6E-25163255IPR003340B3 DNA binding domain
SMARTSM010198.5E-21163278IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407163278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMASGTTNVT TVEASDSGSS TEQHRRQKRQ RPDPTAAVIG SSRFKGVVGQ QSGNWGAQIY  60
ANHQRIWLGT FKTEEDAAAA YDSAAIRLRC GDAHRNFPWT AITLQEPSFQ TQFSTEQILK  120
MIKDGSYVPK FSDHCKTLSL TGQPVGISTR TGDEPGSVLK ELFKKELTPS DVGKLNRLVI  180
PKKHALKFFP RTLDAAAEDG GADDVELVFY DKAMRSWKFR YCYWKSSQSF VFTRGWNRFV  240
KDKGIKARDV VIFSAYEYKD NNNGPGSETR SICVLDVEYT DRRDEDGNDN VNNNNGVEKK  300
TEEGSDEDIE ERREGVEMEM GNKDVTPAGF MLFGVQII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2716227613123DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184038.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A484NJH01e-144A0A484NJH0_9ASTE; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-79RAV family protein