PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000994.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Whirly
Protein Properties Length: 219aa    MW: 24191.8 Da    PI: 10.1027
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000994.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1951.1e-60441812139
                   Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 
                              +yk+ka+l+v++++ptf++l+sg+lk++r+G+++l++ +a++erkydWekkq falsatev++l++l++ +sceffhdp++ +sn+
  Itr_sc000994.1_g00004.1  44 IYKGKASLSVEPRLPTFSKLNSGALKVERKGSIMLTFLPAVGERKYDWEKKQMFALSATEVGTLLNLGPSDSCEFFHDPSMLQSNA 129
                              9************************************************************************************* PP

                   Whirly  88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                              G+vrk+l+v+ l dGsG+f++lsv n+  k+n++++vPv+ aef+v+r++++
  Itr_sc000994.1_g00004.1 130 GEVRKTLSVKALGDGSGYFMSLSVVNNAHKTNDRLTVPVTGAEFSVMRTAFN 181
                              *************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.6E-7531201IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.14E-6337203IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-5844178IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLKLSKLLGT SLRGFSSQAG MPIAKKYFEA DGTLRKKVFA PYTIYKGKAS LSVEPRLPTF  60
SKLNSGALKV ERKGSIMLTF LPAVGERKYD WEKKQMFALS ATEVGTLLNL GPSDSCEFFH  120
DPSMLQSNAG EVRKTLSVKA LGDGSGYFMS LSVVNNAHKT NDRLTVPVTG AEFSVMRTAF  180
NFALPHIMGW DQYTNLQQTN TSELPTGNVA QFAKSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-88301952168StWhy2
3n1i_A2e-88301952168protein StWhy2
3n1j_A2e-88301952168Protein StWhy2
3n1k_A2e-88301952168protein StWhy2
3n1l_A2e-88301952168protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151828.11e-158PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0344e-94WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A328DPP01e-113A0A328DPP0_9ASTE; Uncharacterized protein
STRINGXP_009772771.17e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-86WHIRLY 2